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Allen Institute

Data Scientist II, Deep Learning, Image Analysis

Allen Institute

. Design and implement ML/DL pipelines for microscopy image analysis .

Posted 9/25/2026full-timeSeattle • Washington • United StatesJunior💰 $112,950 - $139,750 per yearWebsite

Tech Stack

Tools & technologies
NumpyPythonPyTorchTensorflow

About the role

Key responsibilities & impact
  • Design and implement ML/DL pipelines for microscopy image analysis
  • Preprocess and clean large-scale microscopy datasets
  • Develop, optimize, and fine-tune classical and deep learning models for segmentation, feature extraction, and classification
  • Integrate and scale image analysis protocols into high-throughput computational pipelines
  • Participate in code reviews and contribute to efficient, maintainable, well-documented codebases
  • Maintain reproducible analysis records, version-controlled code, documented parameters, and traceable results
  • Coordinate with experimental scientists on data collection and study design
  • Track developments in machine learning and image analysis and evaluate promising methods
  • Work with large-scale microscopy datasets on dedicated HPC computing infrastructure
  • Collaborate with multidisciplinary computational and experimental research teams

Requirements

What you’ll need
  • Bachelor's degree in computer science, engineering, physics, data science, computational biology, or a related quantitative field
  • 1+ year of relevant experience
  • Demonstrated experience developing ML/DL models for segmentation, classification, or feature extraction
  • Proficiency in Python, including scientific and data manipulation libraries such as NumPy and scikit-image
  • Working experience with a deep learning framework such as PyTorch or TensorFlow
  • Adherence to SOPs, GLPs and regulatory requirements
  • No work visa sponsorship available
  • No relocation assistance available

Benefits

Comp & perks
  • Medical insurance
  • Dental insurance
  • Vision insurance
  • Basic life insurance
  • 401k plan
  • Paid time off
  • Limited remote work flexibility