Research Associate III – Spatial Biology

Allen Institute

. Run high-throughput spatial genomics workflows using custom experimental platforms, including the MERFISH+ large-format fluorescence microscopy-based technique .

Posted 10/8/2026full-timeSeattle • Washington • United StatesMid-Level💰 $77,150 - $94,550 per yearWebsite

Core Competencies

Role fit

Core Competencies

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Demonstrates expertise in high-throughput spatial genomics workflows, including proficiency with the MERFISH+ platform and advanced microscopy techniques. Capable of maintaining detailed experimental records, performing quality control, and contributing to multidisciplinary team goals.

Highest-signal resume keywords

High-Throughput Spatial Genomics WorkflowsMERFISH+ / MERSCOPE / Xenium Spatial TranscriptomicsPython or SQL-Based Automation ToolsData Science and Computational InfrastructureFluorescent Microscopy Techniques

ATS Keywords

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Applicant Tracking System Keywords

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Hard Skills

High-Throughput MicroscopyImage AnalysisData ManagementExperimental Protocol OptimizationQuality ControlManual DexterityNeuroanatomy UnderstandingSectioning and Staining TechniquesAutomation Tools ProficiencyExperimental Data Tracking

Soft Skills

Attention to DetailOrganizational SkillsCommunication SkillsIndependent TroubleshootingTeam Collaboration

Tools & Technologies

Microsoft OfficeFluorescence MicroscopyExperimental PlatformsData Reporting WorkflowsAutomated Data Management

Certifications & Qualifications

Occupational Health Clearance

Industry Keywords

Spatial GenomicsNeurobiologyCell BiologyBiochemistryFluorescent Microscopy

Tech Stack

Tools & technologies

PythonSQL

About the role

Key responsibilities & impact

Run high-throughput spatial genomics workflows using custom experimental platforms, including the MERFISH+ large-format fluorescence microscopy-based technique
Perform quality control and primary image analysis on spatial genomics datasets
Track and organize experimental data and metadata within and across experiments
Maintain instruments to ensure proper performance and throughput
Troubleshoot and optimize experimental protocols and workflows
Contribute to and audit standard operating procedures (SOPs)
Contribute to a cohesive multidisciplinary team and support departmental and scientific-unit goals
Maintain detailed and precise experimental records
Generate presentations to communicate results
Share results rapidly and transparently with the team
Report to the senior manager, spatial biology

Requirements

What you’ll need

Bachelor’s degree in neurobiology, cell biology, biochemistry or related field
Minimum of 4 years of relevant experience
Hands-on experience working with advanced high-throughput microscopes
Exceptional manual dexterity and attention to detail
Basic understanding of neuroanatomy
Proficient in Microsoft Office programs
Experience with the MERFISH+ /MERSCOPE/Xenium spatial transcriptomics platform preferred
Experience with data science and developing computational infrastructure preferred
Proficiency with Python or SQL-based automation tools preferred
Experience with automated data management and reporting workflows preferred
Familiarity with human neuroanatomy preferred
Experience with sectioning, staining, and imaging brain tissues with fluorescent microscopy preferred
Excellent organizational and communication skills
Ability to execute work and troubleshoot independently
Must be able to work onsite for the majority of working hours
Must complete Occupational Health clearance requirements if working with live animals
Work visa sponsorship is not provided

Benefits

Comp & perks

Medical insurance
Dental insurance
Vision insurance
Basic life insurance
401(k) plan
Paid time off
Relocation assistance
Limited remote work flexibility
Reasonable accommodations for qualified individuals with disabilities