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Substrate

Member of Technical Staff – Intelligence, Functional Genomics

Substrate

. Own the analysis of functional genomics data .

Posted 10/9/2026full-timeLondon • United KingdomLeadWebsite

Core Competencies

Role fit
Core Competencies

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Demonstrates expertise in functional genomics data analysis, including single-cell RNA-seq and CRISPR screen QC. Proficient in building reproducible pipelines and integrating multimodal data while effectively communicating results to scientists and leadership.

Highest-signal resume keywords
PhD In Genomics Or BioinformaticsStrong Python Or R SkillsSingle-Cell RNA-Seq AnalysisCRISPR Screen QCStatistical And Machine Learning Methods

ATS Keywords

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Applicant Tracking System Keywords

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Hard Skills
Functional Genomics Data AnalysisSingle-Cell RNA-Seq AnalysisCRISPR Screen QCStatistical MethodsMachine Learning MethodsDifferential Expression AnalysisData ModellingImage-Based ProfilingMulti-Omic IntegrationPipeline Development
Soft Skills
Clear CommunicationCollaboration With Scientists
Tools & Technologies
ScanpySeuratCellProfilerPycytominerNextflowSnakemakeDockerAWS
Industry Keywords
GenomicsBioinformaticsComputational BiologyPerturbation ScreensHigh-Content ImagingProteomicsTranscriptional AnalysisBatch EffectsConfounders

Tech Stack

Tools & technologies
AWSCloudDockerPython

About the role

Key responsibilities & impact
  • Own the analysis of functional genomics data
  • Act as the main computational partner to scientists running perturbation screens
  • Contribute from screen design through hit selection and evidence presentation
  • Analyse multimodal data from single-cell and pooled CRISPR screens, sequencing, Cell Painting, high-content imaging and proteomics
  • Review existing analysis and QC for CRISPR screens and Cell Painting
  • Perform QC, guide assignment, differential expression and modelling of perturbation effects
  • Build an image-based Cell Painting profiling pipeline covering feature extraction, normalisation and phenotypic scoring
  • Advise on screen design, including power, replication, library coverage, plate layout and batch effects
  • Integrate proteomic, transcriptomic and imaging readouts from the same perturbations
  • Build reproducible and versioned pipelines with the software team
  • Present results, uncertainty and QC to scientists and leadership
  • Work closely with functional genomics scientists and the software team
  • Report into the intelligence team

Requirements

What you’ll need
  • PhD, or a master’s with two to three years of relevant experience, in genomics, bioinformatics, computational biology, statistics or a related field
  • Strong Python or R
  • Good engineering habits such as Git, code review and reproducible workflows
  • Experience working with coding agents
  • Hands-on single-cell RNA-seq analysis, for example with Scanpy or Seurat
  • CRISPR screen QC, including guide assignment and knockdown efficiency
  • Statistical and machine learning methods on biological data, including linear and mixed models, multiple testing, and handling batch effects and confounders
  • Experience working closely with wet-lab scientists and explaining results clearly to people outside the field
  • Background in genomics
  • Experience analysing real screening or single-cell data and building things other people relied on
  • Nice to have: Perturb-seq or combinatorial-barcoding single-cell RNA-seq, such as Parse Evercode
  • Nice to have: Image-based profiling, such as CellProfiler or pycytominer, or deep-learning image analysis
  • Nice to have: Multi-omic integration methods
  • Nice to have: Workflow managers such as Nextflow or Snakemake, containers such as Docker, and cloud or HPC computing such as AWS

Benefits

Comp & perks
  • 30 days of annual leave plus public holidays
  • Pension with a 10% employer contribution
  • Bupa private health cover
  • Regular offsite
  • Time in person with scientists in a London lab and office